2️Softwares and versions

Software version information:

Clair3

Clair3 v1.0.8

Conda environment: clair3 Dir:/opt/conda/envs/clair3/bin/run_clair3.sh

Minimap2

Minimap2 v2.27-r1193

Conda environment: base Dir:/opt/minimap2/minimap2

Samtools

Samtools v1.15.1

Conda environment:base Dir:/opt/conda/bin/samtools

Sniffles2

Sniffles2 Version 2.3.3

Conda environment:sniffles Dir:/opt/conda/envs/sniffles/bin/sniffles

CuteSV

CuteSV 2.1.1

Conda environment:cutesv Dir:/opt/conda/envs/cutesv/bin/cuteSV

Svim

Svim 2.0.0

Conda environment:svim Dir:/opt/conda/envs/svim/bin/svim

CombiSV

CombiSV2.2

Conda environment:base Dir:/opt/combiSV/combiSV2.2.pl

Openjdk

Path:/opt/jdk-17.0.9/bin/java

Svanna

Svanna 1.0.4

Java environment:/opt/jdk-17.0.9/bin/java -jar Dir:/opt/svanna-cli-1.0.4/svanna-cli-1.0.4.jar Data dir:/opt/svanna-cli-1.0.4/svanna-data

Tldr

Tldr 1.2.2

Conda environment:tldr Dir:/opt/tldr/tldr/tldr

PanDepth

Pandepthv2.25

Conda environment:base Dir:/opt/PanDepth/pandepth

Straglr

Straglr v1.4.4

Conda environmet:straglr Dir:/opt/conda/envs/straglr/bin/straglr-genotype